CellTrack

Tracking of roots in microscopy images.

Check changelog to see what is new.

Install

1. Install Conda (for Python 3, 64-bit) and check “Add Anaconda to my PATH environment variable” during the installation

2. Use terminal to install required packages

   conda create -n celltrack -c mjirik -c conda-forge celltrack pywin32
   conda activate celltrack
   python -m celltrack install
   python -m celltrack
   

The pywin32 is used for icon installation. It can be skipped.

For developpers

Clone the repo

git clone git@github.com:mjirik/celltrack.git

Run

cd celltrack
python -m celltrack

GUI

Uninstall

1. Use terminal to remove celltrack environment

conda remove --name celltrack --all

1. Manually remove icon from your desktop

2. You can uninstall Conda by deleting conda directory in your home dir